diff options
Diffstat (limited to 'benchmarks/benchmarksgame/revcomp.java')
| -rw-r--r-- | benchmarks/benchmarksgame/revcomp.java | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/benchmarks/benchmarksgame/revcomp.java b/benchmarks/benchmarksgame/revcomp.java index 8f0b949..323199b 100644 --- a/benchmarks/benchmarksgame/revcomp.java +++ b/benchmarks/benchmarksgame/revcomp.java @@ -24,7 +24,9 @@ package benchmarks.benchmarksgame; import java.io.*; +// CHECKSTYLE.OFF: TypeName public class revcomp { +// CHECKSTYLE.ON: TypeName private ReversibleByteArray buf = new ReversibleByteArray(); InputStream stream = new ByteArrayInputStream(fastaStr.getBytes()); static final byte[] cmp = new byte[128]; @@ -49,7 +51,8 @@ public class revcomp { static class ReversibleByteArray extends java.io.ByteArrayOutputStream { void reverse() throws Exception { if (count > 0) { - int begin = 0, end = count - 1; + int begin = 0; + int end = count - 1; while (buf[begin++] != '\n') ; while (begin <= end) { if (buf[begin] == '\n') begin++; @@ -71,7 +74,8 @@ public class revcomp { stream.reset(); while ((read = stream.read(line)) != -1) { - int i = 0, last = 0; + int i = 0; + int last = 0; while (i < read) { if (line[i] == '>') { buf.write(line, last, i - last); |