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Diffstat (limited to 'src/main/java/org/apache/commons/math/stat/Frequency.java')
-rw-r--r-- | src/main/java/org/apache/commons/math/stat/Frequency.java | 603 |
1 files changed, 603 insertions, 0 deletions
diff --git a/src/main/java/org/apache/commons/math/stat/Frequency.java b/src/main/java/org/apache/commons/math/stat/Frequency.java new file mode 100644 index 0000000..434819e --- /dev/null +++ b/src/main/java/org/apache/commons/math/stat/Frequency.java @@ -0,0 +1,603 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.math.stat; + +import java.io.Serializable; +import java.text.NumberFormat; +import java.util.Iterator; +import java.util.Comparator; +import java.util.TreeMap; + +import org.apache.commons.math.MathRuntimeException; +import org.apache.commons.math.exception.util.LocalizedFormats; + +/** + * Maintains a frequency distribution. + * <p> + * Accepts int, long, char or Comparable values. New values added must be + * comparable to those that have been added, otherwise the add method will + * throw an IllegalArgumentException.</p> + * <p> + * Integer values (int, long, Integer, Long) are not distinguished by type -- + * i.e. <code>addValue(Long.valueOf(2)), addValue(2), addValue(2l)</code> all have + * the same effect (similarly for arguments to <code>getCount,</code> etc.).</p> + * <p> + * char values are converted by <code>addValue</code> to Character instances. + * As such, these values are not comparable to integral values, so attempts + * to combine integral types with chars in a frequency distribution will fail. + * </p> + * <p> + * The values are ordered using the default (natural order), unless a + * <code>Comparator</code> is supplied in the constructor.</p> + * + * @version $Revision: 1054186 $ $Date: 2011-01-01 03:28:46 +0100 (sam. 01 janv. 2011) $ + */ +public class Frequency implements Serializable { + + /** Serializable version identifier */ + private static final long serialVersionUID = -3845586908418844111L; + + /** underlying collection */ + private final TreeMap<Comparable<?>, Long> freqTable; + + /** + * Default constructor. + */ + public Frequency() { + freqTable = new TreeMap<Comparable<?>, Long>(); + } + + /** + * Constructor allowing values Comparator to be specified. + * + * @param comparator Comparator used to order values + */ + @SuppressWarnings("unchecked") // TODO is the cast OK? + public Frequency(Comparator<?> comparator) { + freqTable = new TreeMap<Comparable<?>, Long>((Comparator<? super Comparable<?>>) comparator); + } + + /** + * Return a string representation of this frequency + * distribution. + * + * @return a string representation. + */ + @Override + public String toString() { + NumberFormat nf = NumberFormat.getPercentInstance(); + StringBuilder outBuffer = new StringBuilder(); + outBuffer.append("Value \t Freq. \t Pct. \t Cum Pct. \n"); + Iterator<Comparable<?>> iter = freqTable.keySet().iterator(); + while (iter.hasNext()) { + Comparable<?> value = iter.next(); + outBuffer.append(value); + outBuffer.append('\t'); + outBuffer.append(getCount(value)); + outBuffer.append('\t'); + outBuffer.append(nf.format(getPct(value))); + outBuffer.append('\t'); + outBuffer.append(nf.format(getCumPct(value))); + outBuffer.append('\n'); + } + return outBuffer.toString(); + } + + /** + * Adds 1 to the frequency count for v. + * <p> + * If other objects have already been added to this Frequency, v must + * be comparable to those that have already been added. + * </p> + * + * @param v the value to add. + * @throws IllegalArgumentException if <code>v</code> is not Comparable, + * or is not comparable with previous entries + * @deprecated use {@link #addValue(Comparable)} instead + */ + @Deprecated + public void addValue(Object v) { + if (v instanceof Comparable<?>){ + addValue((Comparable<?>) v); + } else { + throw MathRuntimeException.createIllegalArgumentException( + LocalizedFormats.CLASS_DOESNT_IMPLEMENT_COMPARABLE, + v.getClass().getName()); + } + } + + /** + * Adds 1 to the frequency count for v. + * <p> + * If other objects have already been added to this Frequency, v must + * be comparable to those that have already been added. + * </p> + * + * @param v the value to add. + * @throws IllegalArgumentException if <code>v</code> is not comparable with previous entries + */ + public void addValue(Comparable<?> v){ + Comparable<?> obj = v; + if (v instanceof Integer) { + obj = Long.valueOf(((Integer) v).longValue()); + } + try { + Long count = freqTable.get(obj); + if (count == null) { + freqTable.put(obj, Long.valueOf(1)); + } else { + freqTable.put(obj, Long.valueOf(count.longValue() + 1)); + } + } catch (ClassCastException ex) { + //TreeMap will throw ClassCastException if v is not comparable + throw MathRuntimeException.createIllegalArgumentException( + LocalizedFormats.INSTANCES_NOT_COMPARABLE_TO_EXISTING_VALUES, + v.getClass().getName()); + } + } + + /** + * Adds 1 to the frequency count for v. + * + * @param v the value to add. + */ + public void addValue(int v) { + addValue(Long.valueOf(v)); + } + + /** + * Adds 1 to the frequency count for v. + * + * @param v the value to add. + * @deprecated to be removed in math 3.0 + */ + @Deprecated + public void addValue(Integer v) { + addValue(Long.valueOf(v.longValue())); + } + + /** + * Adds 1 to the frequency count for v. + * + * @param v the value to add. + */ + public void addValue(long v) { + addValue(Long.valueOf(v)); + } + + /** + * Adds 1 to the frequency count for v. + * + * @param v the value to add. + */ + public void addValue(char v) { + addValue(Character.valueOf(v)); + } + + /** Clears the frequency table */ + public void clear() { + freqTable.clear(); + } + + /** + * Returns an Iterator over the set of values that have been added. + * <p> + * If added values are integral (i.e., integers, longs, Integers, or Longs), + * they are converted to Longs when they are added, so the objects returned + * by the Iterator will in this case be Longs.</p> + * + * @return values Iterator + */ + public Iterator<Comparable<?>> valuesIterator() { + return freqTable.keySet().iterator(); + } + + //------------------------------------------------------------------------- + + /** + * Returns the sum of all frequencies. + * + * @return the total frequency count. + */ + public long getSumFreq() { + long result = 0; + Iterator<Long> iterator = freqTable.values().iterator(); + while (iterator.hasNext()) { + result += iterator.next().longValue(); + } + return result; + } + + /** + * Returns the number of values = v. + * Returns 0 if the value is not comparable. + * + * @param v the value to lookup. + * @return the frequency of v. + * @deprecated replaced by {@link #getCount(Comparable)} as of 2.0 + */ + @Deprecated + public long getCount(Object v) { + return getCount((Comparable<?>) v); + } + + /** + * Returns the number of values = v. + * Returns 0 if the value is not comparable. + * + * @param v the value to lookup. + * @return the frequency of v. + */ + public long getCount(Comparable<?> v) { + if (v instanceof Integer) { + return getCount(((Integer) v).longValue()); + } + long result = 0; + try { + Long count = freqTable.get(v); + if (count != null) { + result = count.longValue(); + } + } catch (ClassCastException ex) { + // ignore and return 0 -- ClassCastException will be thrown if value is not comparable + } + return result; + } + + /** + * Returns the number of values = v. + * + * @param v the value to lookup. + * @return the frequency of v. + */ + public long getCount(int v) { + return getCount(Long.valueOf(v)); + } + + /** + * Returns the number of values = v. + * + * @param v the value to lookup. + * @return the frequency of v. + */ + public long getCount(long v) { + return getCount(Long.valueOf(v)); + } + + /** + * Returns the number of values = v. + * + * @param v the value to lookup. + * @return the frequency of v. + */ + public long getCount(char v) { + return getCount(Character.valueOf(v)); + } + + /** + * Returns the number of values in the frequency table. + * + * @return the number of unique values that have been added to the frequency table. + * @see #valuesIterator() + */ + public int getUniqueCount(){ + return freqTable.keySet().size(); + } + + //------------------------------------------------------------- + + /** + * Returns the percentage of values that are equal to v + * (as a proportion between 0 and 1). + * <p> + * Returns <code>Double.NaN</code> if no values have been added.</p> + * + * @param v the value to lookup + * @return the proportion of values equal to v + * @deprecated replaced by {@link #getPct(Comparable)} as of 2.0 + */ + @Deprecated + public double getPct(Object v) { + return getPct((Comparable<?>) v); + } + + /** + * Returns the percentage of values that are equal to v + * (as a proportion between 0 and 1). + * <p> + * Returns <code>Double.NaN</code> if no values have been added.</p> + * + * @param v the value to lookup + * @return the proportion of values equal to v + */ + public double getPct(Comparable<?> v) { + final long sumFreq = getSumFreq(); + if (sumFreq == 0) { + return Double.NaN; + } + return (double) getCount(v) / (double) sumFreq; + } + + /** + * Returns the percentage of values that are equal to v + * (as a proportion between 0 and 1). + * + * @param v the value to lookup + * @return the proportion of values equal to v + */ + public double getPct(int v) { + return getPct(Long.valueOf(v)); + } + + /** + * Returns the percentage of values that are equal to v + * (as a proportion between 0 and 1). + * + * @param v the value to lookup + * @return the proportion of values equal to v + */ + public double getPct(long v) { + return getPct(Long.valueOf(v)); + } + + /** + * Returns the percentage of values that are equal to v + * (as a proportion between 0 and 1). + * + * @param v the value to lookup + * @return the proportion of values equal to v + */ + public double getPct(char v) { + return getPct(Character.valueOf(v)); + } + + //----------------------------------------------------------------------------------------- + + /** + * Returns the cumulative frequency of values less than or equal to v. + * <p> + * Returns 0 if v is not comparable to the values set.</p> + * + * @param v the value to lookup. + * @return the proportion of values equal to v + * @deprecated replaced by {@link #getCumFreq(Comparable)} as of 2.0 + */ + @Deprecated + public long getCumFreq(Object v) { + return getCumFreq((Comparable<?>) v); + } + + /** + * Returns the cumulative frequency of values less than or equal to v. + * <p> + * Returns 0 if v is not comparable to the values set.</p> + * + * @param v the value to lookup. + * @return the proportion of values equal to v + */ + public long getCumFreq(Comparable<?> v) { + if (getSumFreq() == 0) { + return 0; + } + if (v instanceof Integer) { + return getCumFreq(((Integer) v).longValue()); + } + @SuppressWarnings("unchecked") // OK, freqTable is Comparable<?> + Comparator<Comparable<?>> c = (Comparator<Comparable<?>>) freqTable.comparator(); + if (c == null) { + c = new NaturalComparator(); + } + long result = 0; + + try { + Long value = freqTable.get(v); + if (value != null) { + result = value.longValue(); + } + } catch (ClassCastException ex) { + return result; // v is not comparable + } + + if (c.compare(v, freqTable.firstKey()) < 0) { + return 0; // v is comparable, but less than first value + } + + if (c.compare(v, freqTable.lastKey()) >= 0) { + return getSumFreq(); // v is comparable, but greater than the last value + } + + Iterator<Comparable<?>> values = valuesIterator(); + while (values.hasNext()) { + Comparable<?> nextValue = values.next(); + if (c.compare(v, nextValue) > 0) { + result += getCount(nextValue); + } else { + return result; + } + } + return result; + } + + /** + * Returns the cumulative frequency of values less than or equal to v. + * <p> + * Returns 0 if v is not comparable to the values set.</p> + * + * @param v the value to lookup + * @return the proportion of values equal to v + */ + public long getCumFreq(int v) { + return getCumFreq(Long.valueOf(v)); + } + + /** + * Returns the cumulative frequency of values less than or equal to v. + * <p> + * Returns 0 if v is not comparable to the values set.</p> + * + * @param v the value to lookup + * @return the proportion of values equal to v + */ + public long getCumFreq(long v) { + return getCumFreq(Long.valueOf(v)); + } + + /** + * Returns the cumulative frequency of values less than or equal to v. + * <p> + * Returns 0 if v is not comparable to the values set.</p> + * + * @param v the value to lookup + * @return the proportion of values equal to v + */ + public long getCumFreq(char v) { + return getCumFreq(Character.valueOf(v)); + } + + //---------------------------------------------------------------------------------------------- + + /** + * Returns the cumulative percentage of values less than or equal to v + * (as a proportion between 0 and 1). + * <p> + * Returns <code>Double.NaN</code> if no values have been added. + * Returns 0 if at least one value has been added, but v is not comparable + * to the values set.</p> + * + * @param v the value to lookup + * @return the proportion of values less than or equal to v + * @deprecated replaced by {@link #getCumPct(Comparable)} as of 2.0 + */ + @Deprecated + public double getCumPct(Object v) { + return getCumPct((Comparable<?>) v); + + } + + /** + * Returns the cumulative percentage of values less than or equal to v + * (as a proportion between 0 and 1). + * <p> + * Returns <code>Double.NaN</code> if no values have been added. + * Returns 0 if at least one value has been added, but v is not comparable + * to the values set.</p> + * + * @param v the value to lookup + * @return the proportion of values less than or equal to v + */ + public double getCumPct(Comparable<?> v) { + final long sumFreq = getSumFreq(); + if (sumFreq == 0) { + return Double.NaN; + } + return (double) getCumFreq(v) / (double) sumFreq; + } + + /** + * Returns the cumulative percentage of values less than or equal to v + * (as a proportion between 0 and 1). + * <p> + * Returns 0 if v is not comparable to the values set.</p> + * + * @param v the value to lookup + * @return the proportion of values less than or equal to v + */ + public double getCumPct(int v) { + return getCumPct(Long.valueOf(v)); + } + + /** + * Returns the cumulative percentage of values less than or equal to v + * (as a proportion between 0 and 1). + * <p> + * Returns 0 if v is not comparable to the values set.</p> + * + * @param v the value to lookup + * @return the proportion of values less than or equal to v + */ + public double getCumPct(long v) { + return getCumPct(Long.valueOf(v)); + } + + /** + * Returns the cumulative percentage of values less than or equal to v + * (as a proportion between 0 and 1). + * <p> + * Returns 0 if v is not comparable to the values set.</p> + * + * @param v the value to lookup + * @return the proportion of values less than or equal to v + */ + public double getCumPct(char v) { + return getCumPct(Character.valueOf(v)); + } + + /** + * A Comparator that compares comparable objects using the + * natural order. Copied from Commons Collections ComparableComparator. + */ + private static class NaturalComparator<T extends Comparable<T>> implements Comparator<Comparable<T>>, Serializable { + + /** Serializable version identifier */ + private static final long serialVersionUID = -3852193713161395148L; + + /** + * Compare the two {@link Comparable Comparable} arguments. + * This method is equivalent to: + * <pre>(({@link Comparable Comparable})o1).{@link Comparable#compareTo compareTo}(o2)</pre> + * + * @param o1 the first object + * @param o2 the second object + * @return result of comparison + * @throws NullPointerException when <i>o1</i> is <code>null</code>, + * or when <code>((Comparable)o1).compareTo(o2)</code> does + * @throws ClassCastException when <i>o1</i> is not a {@link Comparable Comparable}, + * or when <code>((Comparable)o1).compareTo(o2)</code> does + */ + @SuppressWarnings("unchecked") // cast to (T) may throw ClassCastException, see Javadoc + public int compare(Comparable<T> o1, Comparable<T> o2) { + return o1.compareTo((T) o2); + } + } + + /** {@inheritDoc} */ + @Override + public int hashCode() { + final int prime = 31; + int result = 1; + result = prime * result + + ((freqTable == null) ? 0 : freqTable.hashCode()); + return result; + } + + /** {@inheritDoc} */ + @Override + public boolean equals(Object obj) { + if (this == obj) + return true; + if (!(obj instanceof Frequency)) + return false; + Frequency other = (Frequency) obj; + if (freqTable == null) { + if (other.freqTable != null) + return false; + } else if (!freqTable.equals(other.freqTable)) + return false; + return true; + } + +} |