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Diffstat (limited to 'src/main/java/org/apache/commons/math/stat/descriptive/AbstractUnivariateStatistic.java')
-rw-r--r-- | src/main/java/org/apache/commons/math/stat/descriptive/AbstractUnivariateStatistic.java | 232 |
1 files changed, 232 insertions, 0 deletions
diff --git a/src/main/java/org/apache/commons/math/stat/descriptive/AbstractUnivariateStatistic.java b/src/main/java/org/apache/commons/math/stat/descriptive/AbstractUnivariateStatistic.java new file mode 100644 index 0000000..354dee6 --- /dev/null +++ b/src/main/java/org/apache/commons/math/stat/descriptive/AbstractUnivariateStatistic.java @@ -0,0 +1,232 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.math.stat.descriptive; + +import org.apache.commons.math.MathRuntimeException; +import org.apache.commons.math.exception.DimensionMismatchException; +import org.apache.commons.math.exception.NotPositiveException; +import org.apache.commons.math.exception.NullArgumentException; +import org.apache.commons.math.exception.util.LocalizedFormats; + +/** + * Abstract base class for all implementations of the + * {@link UnivariateStatistic} interface. + * <p> + * Provides a default implementation of <code>evaluate(double[]),</code> + * delegating to <code>evaluate(double[], int, int)</code> in the natural way. + * </p> + * <p> + * Also includes a <code>test</code> method that performs generic parameter + * validation for the <code>evaluate</code> methods.</p> + * + * @version $Revision: 1006299 $ $Date: 2010-10-10 16:47:17 +0200 (dim. 10 oct. 2010) $ + */ +public abstract class AbstractUnivariateStatistic + implements UnivariateStatistic { + + /** Stored data. */ + private double[] storedData; + + /** + * Set the data array. + * <p> + * The stored value is a copy of the parameter array, not the array itself + * </p> + * @param values data array to store (may be null to remove stored data) + * @see #evaluate() + */ + public void setData(final double[] values) { + storedData = (values == null) ? null : values.clone(); + } + + /** + * Get a copy of the stored data array. + * @return copy of the stored data array (may be null) + */ + public double[] getData() { + return (storedData == null) ? null : storedData.clone(); + } + + /** + * Get a reference to the stored data array. + * @return reference to the stored data array (may be null) + */ + protected double[] getDataRef() { + return storedData; + } + + /** + * Set the data array. + * @param values data array to store + * @param begin the index of the first element to include + * @param length the number of elements to include + * @see #evaluate() + */ + public void setData(final double[] values, final int begin, final int length) { + storedData = new double[length]; + System.arraycopy(values, begin, storedData, 0, length); + } + + /** + * Returns the result of evaluating the statistic over the stored data. + * <p> + * The stored array is the one which was set by previous calls to + * </p> + * @return the value of the statistic applied to the stored data + */ + public double evaluate() { + return evaluate(storedData); + } + + /** + * {@inheritDoc} + */ + public double evaluate(final double[] values) { + test(values, 0, 0); + return evaluate(values, 0, values.length); + } + + /** + * {@inheritDoc} + */ + public abstract double evaluate(final double[] values, final int begin, final int length); + + /** + * {@inheritDoc} + */ + public abstract UnivariateStatistic copy(); + + /** + * This method is used by <code>evaluate(double[], int, int)</code> methods + * to verify that the input parameters designate a subarray of positive length. + * <p> + * <ul> + * <li>returns <code>true</code> iff the parameters designate a subarray of + * positive length</li> + * <li>throws <code>IllegalArgumentException</code> if the array is null or + * or the indices are invalid</li> + * <li>returns <code>false</li> if the array is non-null, but + * <code>length</code> is 0. + * </ul></p> + * + * @param values the input array + * @param begin index of the first array element to include + * @param length the number of elements to include + * @return true if the parameters are valid and designate a subarray of positive length + * @throws IllegalArgumentException if the indices are invalid or the array is null + */ + protected boolean test( + final double[] values, + final int begin, + final int length) { + + if (values == null) { + throw new NullArgumentException(LocalizedFormats.INPUT_ARRAY); + } + + if (begin < 0) { + throw new NotPositiveException(LocalizedFormats.START_POSITION, begin); + } + + if (length < 0) { + throw new NotPositiveException(LocalizedFormats.LENGTH, length); + } + + if (begin + length > values.length) { + throw MathRuntimeException.createIllegalArgumentException( + LocalizedFormats.SUBARRAY_ENDS_AFTER_ARRAY_END); + } + + if (length == 0) { + return false; + } + + return true; + + } + + /** + * This method is used by <code>evaluate(double[], double[], int, int)</code> methods + * to verify that the begin and length parameters designate a subarray of positive length + * and the weights are all non-negative, non-NaN, finite, and not all zero. + * <p> + * <ul> + * <li>returns <code>true</code> iff the parameters designate a subarray of + * positive length and the weights array contains legitimate values.</li> + * <li>throws <code>IllegalArgumentException</code> if any of the following are true: + * <ul><li>the values array is null</li> + * <li>the weights array is null</li> + * <li>the weights array does not have the same length as the values array</li> + * <li>the weights array contains one or more infinite values</li> + * <li>the weights array contains one or more NaN values</li> + * <li>the weights array contains negative values</li> + * <li>the start and length arguments do not determine a valid array</li></ul> + * </li> + * <li>returns <code>false</li> if the array is non-null, but + * <code>length</code> is 0. + * </ul></p> + * + * @param values the input array + * @param weights the weights array + * @param begin index of the first array element to include + * @param length the number of elements to include + * @return true if the parameters are valid and designate a subarray of positive length + * @throws IllegalArgumentException if the indices are invalid or the array is null + * @since 2.1 + */ + protected boolean test( + final double[] values, + final double[] weights, + final int begin, + final int length) { + + if (weights == null) { + throw new NullArgumentException(LocalizedFormats.INPUT_ARRAY); + } + + if (weights.length != values.length) { + throw new DimensionMismatchException(weights.length, values.length); + } + + boolean containsPositiveWeight = false; + for (int i = begin; i < begin + length; i++) { + if (Double.isNaN(weights[i])) { + throw MathRuntimeException.createIllegalArgumentException( + LocalizedFormats.NAN_ELEMENT_AT_INDEX, i); + } + if (Double.isInfinite(weights[i])) { + throw MathRuntimeException.createIllegalArgumentException( + LocalizedFormats.INFINITE_ARRAY_ELEMENT, weights[i], i); + } + if (weights[i] < 0) { + throw MathRuntimeException.createIllegalArgumentException( + LocalizedFormats.NEGATIVE_ELEMENT_AT_INDEX, i, weights[i]); + } + if (!containsPositiveWeight && weights[i] > 0.0) { + containsPositiveWeight = true; + } + } + + if (!containsPositiveWeight) { + throw MathRuntimeException.createIllegalArgumentException( + LocalizedFormats.WEIGHT_AT_LEAST_ONE_NON_ZERO); + } + + return test(values, begin, length); + } +} + |