/* * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements. See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License. You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ package org.apache.commons.math3.genetics; /** * Individual in a population. Chromosomes are compared based on their fitness. * *

The chromosomes are IMMUTABLE, and so their fitness is also immutable and therefore it can be * cached. * * @since 2.0 */ public abstract class Chromosome implements Comparable, Fitness { /** Value assigned when no fitness has been computed yet. */ private static final double NO_FITNESS = Double.NEGATIVE_INFINITY; /** Cached value of the fitness of this chromosome. */ private double fitness = NO_FITNESS; /** * Access the fitness of this chromosome. The bigger the fitness, the better the chromosome. * *

Computation of fitness is usually very time-consuming task, therefore the fitness is * cached. * * @return the fitness */ public double getFitness() { if (this.fitness == NO_FITNESS) { // no cache - compute the fitness this.fitness = fitness(); } return this.fitness; } /** * Compares two chromosomes based on their fitness. The bigger the fitness, the better the * chromosome. * * @param another another chromosome to compare * @return *

*/ public int compareTo(final Chromosome another) { return Double.compare(getFitness(), another.getFitness()); } /** * Returns true iff another has the same representation and therefore * the same fitness. By default, it returns false -- override it in your implementation if you * need it. * * @param another chromosome to compare * @return true if another is equivalent to this chromosome */ protected boolean isSame(final Chromosome another) { return false; } /** * Searches the population for another chromosome with the same representation. If * such chromosome is found, it is returned, if no such chromosome exists, returns null * . * * @param population Population to search * @return Chromosome with the same representation, or null if no such chromosome * exists. */ protected Chromosome findSameChromosome(final Population population) { for (Chromosome anotherChr : population) { if (this.isSame(anotherChr)) { return anotherChr; } } return null; } /** * Searches the population for a chromosome representing the same solution, and if it finds one, * updates the fitness to its value. * * @param population Population to search */ public void searchForFitnessUpdate(final Population population) { Chromosome sameChromosome = findSameChromosome(population); if (sameChromosome != null) { fitness = sameChromosome.getFitness(); } } }