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/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.commons.math.genetics;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
/**
* Chromosome represented by an immutable list of a fixed length.
*
* @param <T> type of the representation list
* @version $Revision: 811685 $ $Date: 2009-09-05 19:36:48 +0200 (sam. 05 sept. 2009) $
* @since 2.0
*/
public abstract class AbstractListChromosome<T> extends Chromosome {
/** List representing the chromosome */
private final List<T> representation;
/**
* Constructor.
* @param representation inner representation of the chromosome
*/
public AbstractListChromosome(final List<T> representation) {
try {
checkValidity(representation);
} catch (InvalidRepresentationException e) {
throw new IllegalArgumentException(String.format("Invalid representation for %s", getClass().getSimpleName()), e);
}
this.representation = Collections.unmodifiableList(new ArrayList<T> (representation));
}
/**
* Constructor.
* @param representation inner representation of the chromosome
*/
public AbstractListChromosome(final T[] representation) {
this(Arrays.asList(representation));
}
/**
*
* Asserts that <code>representation</code> can represent a valid chromosome.
* @param chromosomeRepresentation representation of the chromosome
* @throws InvalidRepresentationException iff the <code>representation</code> can not represent
* a valid chromosome
*/
protected abstract void checkValidity(List<T> chromosomeRepresentation) throws InvalidRepresentationException;
/**
* Returns the (immutable) inner representation of the chromosome.
* @return the representation of the chromosome
*/
protected List<T> getRepresentation() {
return representation;
}
/**
* Returns the length of the chromosome.
* @return the length of the chromosome
*/
public int getLength() {
return getRepresentation().size();
}
/**
* Creates a new instance of the same class as <code>this</code> is, with a
* given <code>arrayRepresentation</code>. This is needed in crossover and
* mutation operators, where we need a new instance of the same class, but
* with different array representation.
*
* Usually, this method just calls a constructor of the class.
*
* @param chromosomeRepresentation
* the inner array representation of the new chromosome.
* @return new instance extended from FixedLengthChromosome with the given
* arrayRepresentation
*/
public abstract AbstractListChromosome<T> newFixedLengthChromosome(final List<T> chromosomeRepresentation);
/**
* {@inheritDoc}
*/
@Override
public String toString() {
return String.format("(f=%s %s)", getFitness(), getRepresentation());
}
}
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