summaryrefslogtreecommitdiff
path: root/src/main/java/org/apache/commons/math3/distribution/TDistribution.java
diff options
context:
space:
mode:
Diffstat (limited to 'src/main/java/org/apache/commons/math3/distribution/TDistribution.java')
-rw-r--r--src/main/java/org/apache/commons/math3/distribution/TDistribution.java270
1 files changed, 270 insertions, 0 deletions
diff --git a/src/main/java/org/apache/commons/math3/distribution/TDistribution.java b/src/main/java/org/apache/commons/math3/distribution/TDistribution.java
new file mode 100644
index 0000000..8e6053a
--- /dev/null
+++ b/src/main/java/org/apache/commons/math3/distribution/TDistribution.java
@@ -0,0 +1,270 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.math3.distribution;
+
+import org.apache.commons.math3.exception.NotStrictlyPositiveException;
+import org.apache.commons.math3.exception.util.LocalizedFormats;
+import org.apache.commons.math3.random.RandomGenerator;
+import org.apache.commons.math3.random.Well19937c;
+import org.apache.commons.math3.special.Beta;
+import org.apache.commons.math3.special.Gamma;
+import org.apache.commons.math3.util.FastMath;
+
+/**
+ * Implementation of Student's t-distribution.
+ *
+ * @see "<a href='http://en.wikipedia.org/wiki/Student&apos;s_t-distribution'>Student's
+ * t-distribution (Wikipedia)</a>"
+ * @see "<a href='http://mathworld.wolfram.com/Studentst-Distribution.html'>Student's t-distribution
+ * (MathWorld)</a>"
+ */
+public class TDistribution extends AbstractRealDistribution {
+ /**
+ * Default inverse cumulative probability accuracy.
+ *
+ * @since 2.1
+ */
+ public static final double DEFAULT_INVERSE_ABSOLUTE_ACCURACY = 1e-9;
+
+ /** Serializable version identifier */
+ private static final long serialVersionUID = -5852615386664158222L;
+
+ /** The degrees of freedom. */
+ private final double degreesOfFreedom;
+
+ /** Inverse cumulative probability accuracy. */
+ private final double solverAbsoluteAccuracy;
+
+ /** Static computation factor based on degreesOfFreedom. */
+ private final double factor;
+
+ /**
+ * Create a t distribution using the given degrees of freedom.
+ *
+ * <p><b>Note:</b> this constructor will implicitly create an instance of {@link Well19937c} as
+ * random generator to be used for sampling only (see {@link #sample()} and {@link
+ * #sample(int)}). In case no sampling is needed for the created distribution, it is advised to
+ * pass {@code null} as random generator via the appropriate constructors to avoid the
+ * additional initialisation overhead.
+ *
+ * @param degreesOfFreedom Degrees of freedom.
+ * @throws NotStrictlyPositiveException if {@code degreesOfFreedom <= 0}
+ */
+ public TDistribution(double degreesOfFreedom) throws NotStrictlyPositiveException {
+ this(degreesOfFreedom, DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
+ }
+
+ /**
+ * Create a t distribution using the given degrees of freedom and the specified inverse
+ * cumulative probability absolute accuracy.
+ *
+ * <p><b>Note:</b> this constructor will implicitly create an instance of {@link Well19937c} as
+ * random generator to be used for sampling only (see {@link #sample()} and {@link
+ * #sample(int)}). In case no sampling is needed for the created distribution, it is advised to
+ * pass {@code null} as random generator via the appropriate constructors to avoid the
+ * additional initialisation overhead.
+ *
+ * @param degreesOfFreedom Degrees of freedom.
+ * @param inverseCumAccuracy the maximum absolute error in inverse cumulative probability
+ * estimates (defaults to {@link #DEFAULT_INVERSE_ABSOLUTE_ACCURACY}).
+ * @throws NotStrictlyPositiveException if {@code degreesOfFreedom <= 0}
+ * @since 2.1
+ */
+ public TDistribution(double degreesOfFreedom, double inverseCumAccuracy)
+ throws NotStrictlyPositiveException {
+ this(new Well19937c(), degreesOfFreedom, inverseCumAccuracy);
+ }
+
+ /**
+ * Creates a t distribution.
+ *
+ * @param rng Random number generator.
+ * @param degreesOfFreedom Degrees of freedom.
+ * @throws NotStrictlyPositiveException if {@code degreesOfFreedom <= 0}
+ * @since 3.3
+ */
+ public TDistribution(RandomGenerator rng, double degreesOfFreedom)
+ throws NotStrictlyPositiveException {
+ this(rng, degreesOfFreedom, DEFAULT_INVERSE_ABSOLUTE_ACCURACY);
+ }
+
+ /**
+ * Creates a t distribution.
+ *
+ * @param rng Random number generator.
+ * @param degreesOfFreedom Degrees of freedom.
+ * @param inverseCumAccuracy the maximum absolute error in inverse cumulative probability
+ * estimates (defaults to {@link #DEFAULT_INVERSE_ABSOLUTE_ACCURACY}).
+ * @throws NotStrictlyPositiveException if {@code degreesOfFreedom <= 0}
+ * @since 3.1
+ */
+ public TDistribution(RandomGenerator rng, double degreesOfFreedom, double inverseCumAccuracy)
+ throws NotStrictlyPositiveException {
+ super(rng);
+
+ if (degreesOfFreedom <= 0) {
+ throw new NotStrictlyPositiveException(
+ LocalizedFormats.DEGREES_OF_FREEDOM, degreesOfFreedom);
+ }
+ this.degreesOfFreedom = degreesOfFreedom;
+ solverAbsoluteAccuracy = inverseCumAccuracy;
+
+ final double n = degreesOfFreedom;
+ final double nPlus1Over2 = (n + 1) / 2;
+ factor =
+ Gamma.logGamma(nPlus1Over2)
+ - 0.5 * (FastMath.log(FastMath.PI) + FastMath.log(n))
+ - Gamma.logGamma(n / 2);
+ }
+
+ /**
+ * Access the degrees of freedom.
+ *
+ * @return the degrees of freedom.
+ */
+ public double getDegreesOfFreedom() {
+ return degreesOfFreedom;
+ }
+
+ /** {@inheritDoc} */
+ public double density(double x) {
+ return FastMath.exp(logDensity(x));
+ }
+
+ /** {@inheritDoc} */
+ @Override
+ public double logDensity(double x) {
+ final double n = degreesOfFreedom;
+ final double nPlus1Over2 = (n + 1) / 2;
+ return factor - nPlus1Over2 * FastMath.log(1 + x * x / n);
+ }
+
+ /** {@inheritDoc} */
+ public double cumulativeProbability(double x) {
+ double ret;
+ if (x == 0) {
+ ret = 0.5;
+ } else {
+ double t =
+ Beta.regularizedBeta(
+ degreesOfFreedom / (degreesOfFreedom + (x * x)),
+ 0.5 * degreesOfFreedom,
+ 0.5);
+ if (x < 0.0) {
+ ret = 0.5 * t;
+ } else {
+ ret = 1.0 - 0.5 * t;
+ }
+ }
+
+ return ret;
+ }
+
+ /** {@inheritDoc} */
+ @Override
+ protected double getSolverAbsoluteAccuracy() {
+ return solverAbsoluteAccuracy;
+ }
+
+ /**
+ * {@inheritDoc}
+ *
+ * <p>For degrees of freedom parameter {@code df}, the mean is
+ *
+ * <ul>
+ * <li>if {@code df > 1} then {@code 0},
+ * <li>else undefined ({@code Double.NaN}).
+ * </ul>
+ */
+ public double getNumericalMean() {
+ final double df = getDegreesOfFreedom();
+
+ if (df > 1) {
+ return 0;
+ }
+
+ return Double.NaN;
+ }
+
+ /**
+ * {@inheritDoc}
+ *
+ * <p>For degrees of freedom parameter {@code df}, the variance is
+ *
+ * <ul>
+ * <li>if {@code df > 2} then {@code df / (df - 2)},
+ * <li>if {@code 1 < df <= 2} then positive infinity ({@code Double.POSITIVE_INFINITY}),
+ * <li>else undefined ({@code Double.NaN}).
+ * </ul>
+ */
+ public double getNumericalVariance() {
+ final double df = getDegreesOfFreedom();
+
+ if (df > 2) {
+ return df / (df - 2);
+ }
+
+ if (df > 1 && df <= 2) {
+ return Double.POSITIVE_INFINITY;
+ }
+
+ return Double.NaN;
+ }
+
+ /**
+ * {@inheritDoc}
+ *
+ * <p>The lower bound of the support is always negative infinity no matter the parameters.
+ *
+ * @return lower bound of the support (always {@code Double.NEGATIVE_INFINITY})
+ */
+ public double getSupportLowerBound() {
+ return Double.NEGATIVE_INFINITY;
+ }
+
+ /**
+ * {@inheritDoc}
+ *
+ * <p>The upper bound of the support is always positive infinity no matter the parameters.
+ *
+ * @return upper bound of the support (always {@code Double.POSITIVE_INFINITY})
+ */
+ public double getSupportUpperBound() {
+ return Double.POSITIVE_INFINITY;
+ }
+
+ /** {@inheritDoc} */
+ public boolean isSupportLowerBoundInclusive() {
+ return false;
+ }
+
+ /** {@inheritDoc} */
+ public boolean isSupportUpperBoundInclusive() {
+ return false;
+ }
+
+ /**
+ * {@inheritDoc}
+ *
+ * <p>The support of this distribution is connected.
+ *
+ * @return {@code true}
+ */
+ public boolean isSupportConnected() {
+ return true;
+ }
+}