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+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.math3.genetics;
+
+/**
+ * Individual in a population. Chromosomes are compared based on their fitness.
+ *
+ * <p>The chromosomes are IMMUTABLE, and so their fitness is also immutable and therefore it can be
+ * cached.
+ *
+ * @since 2.0
+ */
+public abstract class Chromosome implements Comparable<Chromosome>, Fitness {
+ /** Value assigned when no fitness has been computed yet. */
+ private static final double NO_FITNESS = Double.NEGATIVE_INFINITY;
+
+ /** Cached value of the fitness of this chromosome. */
+ private double fitness = NO_FITNESS;
+
+ /**
+ * Access the fitness of this chromosome. The bigger the fitness, the better the chromosome.
+ *
+ * <p>Computation of fitness is usually very time-consuming task, therefore the fitness is
+ * cached.
+ *
+ * @return the fitness
+ */
+ public double getFitness() {
+ if (this.fitness == NO_FITNESS) {
+ // no cache - compute the fitness
+ this.fitness = fitness();
+ }
+ return this.fitness;
+ }
+
+ /**
+ * Compares two chromosomes based on their fitness. The bigger the fitness, the better the
+ * chromosome.
+ *
+ * @param another another chromosome to compare
+ * @return
+ * <ul>
+ * <li>-1 if <code>another</code> is better than <code>this</code>
+ * <li>1 if <code>another</code> is worse than <code>this</code>
+ * <li>0 if the two chromosomes have the same fitness
+ * </ul>
+ */
+ public int compareTo(final Chromosome another) {
+ return Double.compare(getFitness(), another.getFitness());
+ }
+
+ /**
+ * Returns <code>true</code> iff <code>another</code> has the same representation and therefore
+ * the same fitness. By default, it returns false -- override it in your implementation if you
+ * need it.
+ *
+ * @param another chromosome to compare
+ * @return true if <code>another</code> is equivalent to this chromosome
+ */
+ protected boolean isSame(final Chromosome another) {
+ return false;
+ }
+
+ /**
+ * Searches the <code>population</code> for another chromosome with the same representation. If
+ * such chromosome is found, it is returned, if no such chromosome exists, returns <code>null
+ * </code>.
+ *
+ * @param population Population to search
+ * @return Chromosome with the same representation, or <code>null</code> if no such chromosome
+ * exists.
+ */
+ protected Chromosome findSameChromosome(final Population population) {
+ for (Chromosome anotherChr : population) {
+ if (this.isSame(anotherChr)) {
+ return anotherChr;
+ }
+ }
+ return null;
+ }
+
+ /**
+ * Searches the population for a chromosome representing the same solution, and if it finds one,
+ * updates the fitness to its value.
+ *
+ * @param population Population to search
+ */
+ public void searchForFitnessUpdate(final Population population) {
+ Chromosome sameChromosome = findSameChromosome(population);
+ if (sameChromosome != null) {
+ fitness = sameChromosome.getFitness();
+ }
+ }
+}