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Diffstat (limited to 'src/main/java/org/apache/commons/math3/genetics/Chromosome.java')
-rw-r--r-- | src/main/java/org/apache/commons/math3/genetics/Chromosome.java | 108 |
1 files changed, 108 insertions, 0 deletions
diff --git a/src/main/java/org/apache/commons/math3/genetics/Chromosome.java b/src/main/java/org/apache/commons/math3/genetics/Chromosome.java new file mode 100644 index 0000000..532a726 --- /dev/null +++ b/src/main/java/org/apache/commons/math3/genetics/Chromosome.java @@ -0,0 +1,108 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.math3.genetics; + +/** + * Individual in a population. Chromosomes are compared based on their fitness. + * + * <p>The chromosomes are IMMUTABLE, and so their fitness is also immutable and therefore it can be + * cached. + * + * @since 2.0 + */ +public abstract class Chromosome implements Comparable<Chromosome>, Fitness { + /** Value assigned when no fitness has been computed yet. */ + private static final double NO_FITNESS = Double.NEGATIVE_INFINITY; + + /** Cached value of the fitness of this chromosome. */ + private double fitness = NO_FITNESS; + + /** + * Access the fitness of this chromosome. The bigger the fitness, the better the chromosome. + * + * <p>Computation of fitness is usually very time-consuming task, therefore the fitness is + * cached. + * + * @return the fitness + */ + public double getFitness() { + if (this.fitness == NO_FITNESS) { + // no cache - compute the fitness + this.fitness = fitness(); + } + return this.fitness; + } + + /** + * Compares two chromosomes based on their fitness. The bigger the fitness, the better the + * chromosome. + * + * @param another another chromosome to compare + * @return + * <ul> + * <li>-1 if <code>another</code> is better than <code>this</code> + * <li>1 if <code>another</code> is worse than <code>this</code> + * <li>0 if the two chromosomes have the same fitness + * </ul> + */ + public int compareTo(final Chromosome another) { + return Double.compare(getFitness(), another.getFitness()); + } + + /** + * Returns <code>true</code> iff <code>another</code> has the same representation and therefore + * the same fitness. By default, it returns false -- override it in your implementation if you + * need it. + * + * @param another chromosome to compare + * @return true if <code>another</code> is equivalent to this chromosome + */ + protected boolean isSame(final Chromosome another) { + return false; + } + + /** + * Searches the <code>population</code> for another chromosome with the same representation. If + * such chromosome is found, it is returned, if no such chromosome exists, returns <code>null + * </code>. + * + * @param population Population to search + * @return Chromosome with the same representation, or <code>null</code> if no such chromosome + * exists. + */ + protected Chromosome findSameChromosome(final Population population) { + for (Chromosome anotherChr : population) { + if (this.isSame(anotherChr)) { + return anotherChr; + } + } + return null; + } + + /** + * Searches the population for a chromosome representing the same solution, and if it finds one, + * updates the fitness to its value. + * + * @param population Population to search + */ + public void searchForFitnessUpdate(final Population population) { + Chromosome sameChromosome = findSameChromosome(population); + if (sameChromosome != null) { + fitness = sameChromosome.getFitness(); + } + } +} |