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Diffstat (limited to 'src/main/java/org/apache/commons/math3/genetics/UniformCrossover.java')
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diff --git a/src/main/java/org/apache/commons/math3/genetics/UniformCrossover.java b/src/main/java/org/apache/commons/math3/genetics/UniformCrossover.java new file mode 100644 index 0000000..c11450a --- /dev/null +++ b/src/main/java/org/apache/commons/math3/genetics/UniformCrossover.java @@ -0,0 +1,140 @@ +/* + * Licensed to the Apache Software Foundation (ASF) under one or more + * contributor license agreements. See the NOTICE file distributed with + * this work for additional information regarding copyright ownership. + * The ASF licenses this file to You under the Apache License, Version 2.0 + * (the "License"); you may not use this file except in compliance with + * the License. You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package org.apache.commons.math3.genetics; + +import org.apache.commons.math3.exception.DimensionMismatchException; +import org.apache.commons.math3.exception.MathIllegalArgumentException; +import org.apache.commons.math3.exception.OutOfRangeException; +import org.apache.commons.math3.exception.util.LocalizedFormats; +import org.apache.commons.math3.random.RandomGenerator; + +import java.util.ArrayList; +import java.util.List; + +/** + * Perform Uniform Crossover [UX] on the specified chromosomes. A fixed mixing ratio is used to + * combine genes from the first and second parents, e.g. using a ratio of 0.5 would result in + * approximately 50% of genes coming from each parent. This is typically a poor method of crossover, + * but empirical evidence suggests that it is more exploratory and results in a larger part of the + * problem space being searched. + * + * <p>This crossover policy evaluates each gene of the parent chromosomes by chosing a uniform + * random number {@code p} in the range [0, 1]. If {@code p} < {@code ratio}, the parent genes + * are swapped. This means with a ratio of 0.7, 30% of the genes from the first parent and 70% from + * the second parent will be selected for the first offspring (and vice versa for the second + * offspring). + * + * <p>This policy works only on {@link AbstractListChromosome}, and therefore it is parameterized by + * T. Moreover, the chromosomes must have same lengths. + * + * @see <a href="http://en.wikipedia.org/wiki/Crossover_%28genetic_algorithm%29">Crossover + * techniques (Wikipedia)</a> + * @see <a + * href="http://www.obitko.com/tutorials/genetic-algorithms/crossover-mutation.php">Crossover + * (Obitko.com)</a> + * @see <a href="http://www.tomaszgwiazda.com/uniformX.htm">Uniform crossover</a> + * @param <T> generic type of the {@link AbstractListChromosome}s for crossover + * @since 3.1 + */ +public class UniformCrossover<T> implements CrossoverPolicy { + + /** The mixing ratio. */ + private final double ratio; + + /** + * Creates a new {@link UniformCrossover} policy using the given mixing ratio. + * + * @param ratio the mixing ratio + * @throws OutOfRangeException if the mixing ratio is outside the [0, 1] range + */ + public UniformCrossover(final double ratio) throws OutOfRangeException { + if (ratio < 0.0d || ratio > 1.0d) { + throw new OutOfRangeException(LocalizedFormats.CROSSOVER_RATE, ratio, 0.0d, 1.0d); + } + this.ratio = ratio; + } + + /** + * Returns the mixing ratio used by this {@link CrossoverPolicy}. + * + * @return the mixing ratio + */ + public double getRatio() { + return ratio; + } + + /** + * {@inheritDoc} + * + * @throws MathIllegalArgumentException iff one of the chromosomes is not an instance of {@link + * AbstractListChromosome} + * @throws DimensionMismatchException if the length of the two chromosomes is different + */ + @SuppressWarnings("unchecked") + public ChromosomePair crossover(final Chromosome first, final Chromosome second) + throws DimensionMismatchException, MathIllegalArgumentException { + + if (!(first instanceof AbstractListChromosome<?> + && second instanceof AbstractListChromosome<?>)) { + throw new MathIllegalArgumentException( + LocalizedFormats.INVALID_FIXED_LENGTH_CHROMOSOME); + } + return mate((AbstractListChromosome<T>) first, (AbstractListChromosome<T>) second); + } + + /** + * Helper for {@link #crossover(Chromosome, Chromosome)}. Performs the actual crossover. + * + * @param first the first chromosome + * @param second the second chromosome + * @return the pair of new chromosomes that resulted from the crossover + * @throws DimensionMismatchException if the length of the two chromosomes is different + */ + private ChromosomePair mate( + final AbstractListChromosome<T> first, final AbstractListChromosome<T> second) + throws DimensionMismatchException { + final int length = first.getLength(); + if (length != second.getLength()) { + throw new DimensionMismatchException(second.getLength(), length); + } + + // array representations of the parents + final List<T> parent1Rep = first.getRepresentation(); + final List<T> parent2Rep = second.getRepresentation(); + // and of the children + final List<T> child1Rep = new ArrayList<T>(length); + final List<T> child2Rep = new ArrayList<T>(length); + + final RandomGenerator random = GeneticAlgorithm.getRandomGenerator(); + + for (int index = 0; index < length; index++) { + + if (random.nextDouble() < ratio) { + // swap the bits -> take other parent + child1Rep.add(parent2Rep.get(index)); + child2Rep.add(parent1Rep.get(index)); + } else { + child1Rep.add(parent1Rep.get(index)); + child2Rep.add(parent2Rep.get(index)); + } + } + + return new ChromosomePair( + first.newFixedLengthChromosome(child1Rep), + second.newFixedLengthChromosome(child2Rep)); + } +} |