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+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.math3.ode;
+
+import org.apache.commons.math3.RealFieldElement;
+import org.apache.commons.math3.exception.DimensionMismatchException;
+import org.apache.commons.math3.exception.MaxCountExceededException;
+import org.apache.commons.math3.util.MathArrays;
+
+import java.util.ArrayList;
+import java.util.List;
+
+/**
+ * This class represents a combined set of first order differential equations, with at least a
+ * primary set of equations expandable by some sets of secondary equations.
+ *
+ * <p>One typical use case is the computation of the Jacobian matrix for some ODE. In this case, the
+ * primary set of equations corresponds to the raw ODE, and we add to this set another bunch of
+ * secondary equations which represent the Jacobian matrix of the primary set.
+ *
+ * <p>We want the integrator to use <em>only</em> the primary set to estimate the errors and hence
+ * the step sizes. It should <em>not</em> use the secondary equations in this computation. The
+ * {@link FirstOrderFieldIntegrator integrator} will be able to know where the primary set ends and
+ * so where the secondary sets begin.
+ *
+ * @see FirstOrderFieldDifferentialEquations
+ * @see FieldSecondaryEquations
+ * @param <T> the type of the field elements
+ * @since 3.6
+ */
+public class FieldExpandableODE<T extends RealFieldElement<T>> {
+
+ /** Primary differential equation. */
+ private final FirstOrderFieldDifferentialEquations<T> primary;
+
+ /** Components of the expandable ODE. */
+ private List<FieldSecondaryEquations<T>> components;
+
+ /** Mapper for all equations. */
+ private FieldEquationsMapper<T> mapper;
+
+ /**
+ * Build an expandable set from its primary ODE set.
+ *
+ * @param primary the primary set of differential equations to be integrated.
+ */
+ public FieldExpandableODE(final FirstOrderFieldDifferentialEquations<T> primary) {
+ this.primary = primary;
+ this.components = new ArrayList<FieldSecondaryEquations<T>>();
+ this.mapper = new FieldEquationsMapper<T>(null, primary.getDimension());
+ }
+
+ /**
+ * Get the mapper for the set of equations.
+ *
+ * @return mapper for the set of equations
+ */
+ public FieldEquationsMapper<T> getMapper() {
+ return mapper;
+ }
+
+ /**
+ * Add a set of secondary equations to be integrated along with the primary set.
+ *
+ * @param secondary secondary equations set
+ * @return index of the secondary equation in the expanded state, to be used as the parameter to
+ * {@link FieldODEState#getSecondaryState(int)} and {@link
+ * FieldODEStateAndDerivative#getSecondaryDerivative(int)} (beware index 0 corresponds to
+ * main state, additional states start at 1)
+ */
+ public int addSecondaryEquations(final FieldSecondaryEquations<T> secondary) {
+
+ components.add(secondary);
+ mapper = new FieldEquationsMapper<T>(mapper, secondary.getDimension());
+
+ return components.size();
+ }
+
+ /**
+ * Initialize equations at the start of an ODE integration.
+ *
+ * @param t0 value of the independent <I>time</I> variable at integration start
+ * @param y0 array containing the value of the state vector at integration start
+ * @param finalTime target time for the integration
+ * @exception MaxCountExceededException if the number of functions evaluations is exceeded
+ * @exception DimensionMismatchException if arrays dimensions do not match equations settings
+ */
+ public void init(final T t0, final T[] y0, final T finalTime) {
+
+ // initialize primary equations
+ int index = 0;
+ final T[] primary0 = mapper.extractEquationData(index, y0);
+ primary.init(t0, primary0, finalTime);
+
+ // initialize secondary equations
+ while (++index < mapper.getNumberOfEquations()) {
+ final T[] secondary0 = mapper.extractEquationData(index, y0);
+ components.get(index - 1).init(t0, primary0, secondary0, finalTime);
+ }
+ }
+
+ /**
+ * Get the current time derivative of the complete state vector.
+ *
+ * @param t current value of the independent <I>time</I> variable
+ * @param y array containing the current value of the complete state vector
+ * @return time derivative of the complete state vector
+ * @exception MaxCountExceededException if the number of functions evaluations is exceeded
+ * @exception DimensionMismatchException if arrays dimensions do not match equations settings
+ */
+ public T[] computeDerivatives(final T t, final T[] y)
+ throws MaxCountExceededException, DimensionMismatchException {
+
+ final T[] yDot = MathArrays.buildArray(t.getField(), mapper.getTotalDimension());
+
+ // compute derivatives of the primary equations
+ int index = 0;
+ final T[] primaryState = mapper.extractEquationData(index, y);
+ final T[] primaryStateDot = primary.computeDerivatives(t, primaryState);
+ mapper.insertEquationData(index, primaryStateDot, yDot);
+
+ // Add contribution for secondary equations
+ while (++index < mapper.getNumberOfEquations()) {
+ final T[] componentState = mapper.extractEquationData(index, y);
+ final T[] componentStateDot =
+ components
+ .get(index - 1)
+ .computeDerivatives(t, primaryState, primaryStateDot, componentState);
+ mapper.insertEquationData(index, componentStateDot, yDot);
+ }
+
+ return yDot;
+ }
+}