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-rwxr-xr-xvq/make_residue_books.pl177
1 files changed, 177 insertions, 0 deletions
diff --git a/vq/make_residue_books.pl b/vq/make_residue_books.pl
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+++ b/vq/make_residue_books.pl
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+#!/usr/bin/perl
+
+# quick, very dirty little script so that we can put all the
+# information for building a residue book set (except the original
+# partitioning) in one spec file.
+
+#eg:
+
+# >res0_128_128 interleaved
+# haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9
+# :1 res0_128_128_1.vqd, 4, nonseq cull, 0 +- 1
+# :2 res0_128_128_2.vqd, 4, nonseq, 0 +- 1(.7) 2
+# :3 res0_128_128_3.vqd, 4, nonseq, 0 +- 1(.7) 3 5
+# :4 res0_128_128_4.vqd, 2, nonseq, 0 +- 1(.7) 3 5 8 11
+# :5 res0_128_128_5.vqd, 1, nonseq, 0 +- 1 3 5 8 11 14 17 20 24 28 31 35 39
+
+
+die "Could not open $ARGV[0]: $!" unless open (F,$ARGV[0]);
+
+$goflag=0;
+while($line=<F>){
+
+ print "#### $line";
+ if($line=~m/^GO/){
+ $goflag=1;
+ next;
+ }
+
+ if($goflag==0){
+ if($line=~m/\S+/ && !($line=~m/^\#/) ){
+ my $command=$line;
+ print ">>> $command";
+ die "Couldn't shell command.\n\tcommand:$command\n"
+ if syst($command);
+ }
+ next;
+ }
+
+ # >res0_128_128
+ if($line=~m/^>(\S+)\s+(\S*)/){
+ # set the output name
+ $globalname=$1;
+ $interleave=$2;
+ next;
+ }
+
+ # haux 44c0_s/resaux_0.vqd res0_96_128aux 0,4,2 9
+ if($line=~m/^h(.*)/){
+ # build a huffman book (no mapping)
+ my($name,$datafile,$bookname,$interval,$range)=split(' ',$1);
+
+ # check the desired subdir to see if the data file exists
+ if(-e $datafile){
+ my $command="cp $datafile $bookname.tmp";
+ print ">>> $command\n";
+ die "Couldn't access partition data file.\n\tcommand:$command\n"
+ if syst($command);
+
+ my $command="huffbuild $bookname.tmp $interval";
+ print ">>> $command\n";
+ die "Couldn't build huffbook.\n\tcommand:$command\n"
+ if syst($command);
+
+ my $command="rm $bookname.tmp";
+ print ">>> $command\n";
+ die "Couldn't remove temporary file.\n\tcommand:$command\n"
+ if syst($command);
+ }else{
+ my $command="huffbuild $bookname.tmp 0-$range";
+ print ">>> $command\n";
+ die "Couldn't build huffbook.\n\tcommand:$command\n"
+ if syst($command);
+
+ }
+ next;
+ }
+
+ # :1 res0_128_128_1.vqd, 4, nonseq, 0 +- 1
+ if($line=~m/^:(.*)/){
+ my($namedata,$dim,$seqp,$vals)=split(',',$1);
+ my($name,$datafile)=split(' ',$namedata);
+ # build value list
+ my$plusminus="+";
+ my$list;
+ my$thlist;
+ my$count=0;
+ foreach my$val (split(' ',$vals)){
+ if($val=~/\-?\+?\d+/){
+ my$th;
+
+ # got an explicit threshhint?
+ if($val=~/([0-9\.]+)\(([^\)]+)/){
+ $val=$1;
+ $th=$2;
+ }
+
+ if($plusminus=~/-/){
+ $list.="-$val ";
+ if(defined($th)){
+ $thlist.="," if(defined($thlist));
+ $thlist.="-$th";
+ }
+ $count++;
+ }
+ if($plusminus=~/\+/){
+ $list.="$val ";
+ if(defined($th)){
+ $thlist.="," if(defined($thlist));
+ $thlist.="$th";
+ }
+ $count++;
+ }
+ }else{
+ $plusminus=$val;
+ }
+ }
+ die "Couldn't open temp file $globalname$name.vql: $!" unless
+ open(G,">$globalname$name.vql");
+ print G "$count $dim 0 ";
+ if($seqp=~/non/){
+ print G "0\n$list\n";
+ }else{
+ print G "1\n$list\n";
+ }
+ close(G);
+
+ my $command="latticebuild $globalname$name.vql > $globalname$name.vqh";
+ print ">>> $command\n";
+ die "Couldn't build latticebook.\n\tcommand:$command\n"
+ if syst($command);
+
+ if(-e $datafile){
+
+ if($interleave=~/non/){
+ $restune="res1tune";
+ }else{
+ $restune="res0tune";
+ }
+
+ if($seqp=~/cull/){
+ my $command="$restune $globalname$name.vqh $datafile 1 > temp$$.vqh";
+ print ">>> $command\n";
+ die "Couldn't tune latticebook.\n\tcommand:$command\n"
+ if syst($command);
+ }else{
+ my $command="$restune $globalname$name.vqh $datafile > temp$$.vqh";
+ print ">>> $command\n";
+ die "Couldn't tune latticebook.\n\tcommand:$command\n"
+ if syst($command);
+ }
+
+ my $command="mv temp$$.vqh $globalname$name.vqh";
+ print ">>> $command\n";
+ die "Couldn't rename latticebook.\n\tcommand:$command\n"
+ if syst($command);
+
+ }else{
+ print "No matching training file; leaving this codebook untrained.\n";
+ }
+
+ my $command="rm $globalname$name.vql";
+ print ">>> $command\n";
+ die "Couldn't remove temp files.\n\tcommand:$command\n"
+ if syst($command);
+
+ next;
+ }
+}
+
+$command="rm -f temp$$.vqd";
+print ">>> $command\n";
+die "Couldn't remove temp files.\n\tcommand:$command\n"
+ if syst($command);
+
+sub syst{
+ system(@_)/256;
+}